2018 - Bioinformatics Tutorial - Advanced (2018)
  • Bioinformatics Tutorial - Advanced (2018)
  • Getting Startted
  • PART I Basic Skills
    • Introduction of PART I
    • 1.Setup
    • 2.Linux
    • 3.Bash and Github
    • 4.R
    • 5.Python
    • 6.Perl
    • Conclusion of PART I
  • PART II. Basic Bioinfo Analyses
    • Introduction of PART II
    • 1.Mapping, Annotation and QC
    • 2.Expression Matrix
    • 3.Differential Expression
    • Midterm Conclusion
    • 4.Normalization
    • 5.Control Data
    • 6.Motif and Structure
  • PART III. Advanced Bioinfo Analyses
    • Introduction of PART III
    • 1.Machine Learning
    • 2.Feature Selection
    • 3.Deep Learning
  • Appendix
    • Appendix I. Keep Learning
    • Appendix II. Docker Manual
    • Appendix III. Mapping Protocol
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  1. PART II. Basic Bioinfo Analyses

Midterm Conclusion

Previous3.Differential ExpressionNext4.Normalization

Last updated 5 years ago

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Conclusion

Take-Home Message:

The first three sections in PART II are very basic bioinformatics analyses, which are commonly used in various studies. For most students, you may stop here. It's fine if you did not finished some of the homework successfully in the last few weeks. You can practice more and improve your skills in the following months and years. We also recommend some other Tutorials/Pipelines you can learn from:

  • RNA-seq analysis pipeline::

  • lncRNA analysis pipeline:

  • ENCODE pipelines:

For advanced students, you can continue to the following advanced sections.

https://github.com/mgonzalezporta/TeachingMaterial
http://webhome.weizmann.ac.il/home/igoru/PLAR/
https://www.encodeproject.org/pipelines/